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  • Results reproducibility

Results reproducibility · Changes

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Create Results reproducibility authored Feb 08, 2021 by Gabriel Wlazłowski's avatar Gabriel Wlazłowski
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# Introduction
Results reproducibility is a very important issue in science. It has been already noted that in many cases reproducing your own results even after a few months (typical time scale of referee process) may be challenging. It is because in most cases it is not sufficient to have the same version of the code, but you also need precise knowledge about input parameters that were used.
Since the standard methodology in science is based on _try and fail_ methodology, typically at the end we end up with many datasets, and only a few of them is released to publication finally, while others serve as _experimental runs_.
# W-SLDA mechanism of results reproducibility
Developers of W-SLDA Toolkit recognize the need for support that will simplify the process of reproducing of results. To comply with this requirement following mechanism has been implemented:
1. Each file generated by W-SLDA Toolkit in the header provides basic info about the code version that has been used, for example header of `wlog` file may look like:
```
# CREATION TIME OF THE LOG: Sun Feb 7 15:29:44 2021
# EXECUTION COMMAND : ./st-wslda-2d input.txt
# CODE NAME : "W-SLDA-TOOLKIT"
# VERSION OF THE CODE : 2021.01.27
# COMPILATION DATE & TIME : Feb 7 2021, 15:19:57
```
2. When executing the code, all user-definable files are recreated and attached to the data set. For example, if the user set `outprefix` as `test`, then among output files there will be:
```bash
test_input.txt # input file used for calculations
test_predefines.h # predefines selected at compilation stage
test_problem-definition.h # user's definition of the problem
test_logger.h # user's logger
```
This provides full information (apart from any external data added by user) required to reproduce your results.
# Good practices
To learn more about good practices related to results reproducibility issue see:
* [Creating Reproducible Data Science Projects](https://towardsdatascience.com/creating-reproducible-data-science-projects-1fa446369386)
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