Installing-the-toolkit:-Eagle-example.md

@@ -9,57 +9,26 @@ git clone https://gitlab.fizyka.pw.edu.pl/wtools/wslda.git
 
 # Step 2: Compiling supporting libraries and tools
 ```
-# On Eagle system compilation can be executed only via interactive session
+# On Eagle system compilation can be executed only via an interactive session
 srun --pty -n 1 /bin/bash
 
+# load compilers
+module load openmpi/1.10.2-1_gcc482
+
 # go to W-SLDA folder
 gabrielw@e1135:~/grant_518/project_data/wslda$ ./install-libs.sh 
 Installing libs...
 # Making lib/wderiv..
-make: Entering directory `/mnt/storage_2/project_data/grant_518/cold-atoms/lib/wderiv'
-gcc -std=c99 -O3 ./c-examples/simple-1d.c -o ./c-examples/simple-1d -I./c/ -L. -lwderiv -lfftw3 -lm 
-gcc -std=c99 -std=c99 ./c/test-wderiv.c -o ./c/test-wderiv -I./c/ -L. -lwderiv -lfftw3 -lm 
-gcc -std=c99 -std=c99 ./c/test-wderiv1D.c -o ./c/test-wderiv1D -I./c/ -L. -lwderiv -lfftw3 -lm 
-gcc -std=c99 -std=c99 ./c/test-wderiv2D.c -o ./c/test-wderiv2D -I./c/ -L. -lwderiv -lfftw3 -lm
-make: Leaving directory `/mnt/storage_2/project_data/grant_518/cold-atoms/lib/wderiv'
-# Making lib/winterp..
-make: Entering directory `/mnt/storage_2/project_data/grant_518/cold-atoms/lib/winterp'
-gcc -std=c99 -O3 ./c-examples/lattice2d-simple.c -o ./c-examples/lattice2d-simple -I./c/ -L. -lwinterp -lfftw3 -lm
-gcc -std=c99 -O3 ./c-examples/interp1d_simple.c -o ./c-examples/interp1d_simple -I./c/ -L. -lwinterp -lfftw3 -lm
-gcc -std=c99 -O3 ./c-examples/interp2d_simple.c -o ./c-examples/interp2d_simple -I./c/ -L. -lwinterp -lfftw3 -lm
-gcc -std=c99 -O3 ./c-examples/interp3d_simple.c -o ./c-examples/interp3d_simple -I./c/ -L. -lwinterp -lfftw3 -lm
-gcc -std=c99 -O3 ./c-examples/section2d_simple.c -o ./c-examples/section2d_simple -I./c/ -L. -lwinterp -lfftw3 -lm
-make: Leaving directory `/mnt/storage_2/project_data/grant_518/cold-atoms/lib/winterp'
-# Making lib/wdata..
-make: Entering directory `/mnt/storage_2/project_data/grant_518/cold-atoms/lib/wdata'
-gcc -std=gnu99 ./c-examples/example-write.c -o ./c-examples/example-write -I./c/ -L. -lwdata -lm 
-gcc -std=gnu99 ./c-examples/example-write-many.c -o ./c-examples/example-write-many -I./c/ -L. -lwdata -lm 
-gcc -std=gnu99 ./c-examples/example-write-many-t_varying.c -o ./c-examples/example-write-many-t_varying -I./c/ -L. -lwdata -lm 
-gcc -std=gnu99 ./c-examples/example-read.c -o ./c-examples/example-read -I./c/ -L. -lwdata -lm 
-gcc -std=gnu99 ./c-examples/example-addvar.c -o ./c-examples/example-addvar -I./c/ -L. -lwdata -lm 
-mkdir -p ./bin/
-gcc -std=gnu99 ./tools/wdata-cut.c -o ./bin/wdata-cut -I./c/ -L. -lwdata -lm
-gcc -std=gnu99 ./tools/wdata-interpolate.c -o ./bin/wdata-interpolate -I./c/ -L. -lwdata -I../winterp/c -L../winterp/ -lwinterp -lfftw3 -lm
-gcc -std=gnu99 ./tools/wdata-datadim-up.c -o ./bin/wdata-datadim-up -I./c/ -L. -lwdata -lm
-make: Leaving directory `/mnt/storage_2/project_data/grant_518/cold-atoms/lib/wdata'
-# Making tools..
-make: Entering directory `/mnt/storage_2/project_data/grant_518/cold-atoms/tools'
-mkdir -p ./bin
-gcc -std=gnu99 -O3 wdata2checkpoint.c -o ./bin/wdata2checkpoint -L. -I../lib/wdata/c -L../lib/wdata/ -lwdata  -lm 
-gcc -std=gnu99 -O3 dpca2wdata.c -o ./bin/dpca2wdata -I../hpc-engine/ -I../lib/wdata/c -L../lib/wdata/ -lwdata  -lm 
-gcc -std=gnu99 -O3 dpca2wdata-hard.c -o ./bin/dpca2wdata-hard -I../hpc-engine/ -I../lib/wdata/c -L../lib/wdata/ -lwdata  -lm 
-mpic++ hdc-3d.cpp -o ./bin/wslda-hdc-3d -I../lib/wdata/c -L../lib/wdata/ -lwdata  -lfftw3 -lm
-make: mpic++: Command not found
-make: *** [wslda-hdc-3d] Error 127
+# ...
 make: Leaving directory `/mnt/storage_2/project_data/grant_518/cold-atoms/tools'
 # ==========================================================================
 # =========================== SET ENVIRONMENT ==============================
 # ==========================================================================
 #  Add to your .bashrc
  
-export WSLDA=/home/users/gabrielw/grant_518/project_data/wslda
-export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/users/gabrielw/grant_518/project_data/wslda/lib/wdata:/home/users/gabrielw/grant_518/project_data/wslda/lib/wderiv:/home/users/gabrielw/grant_518/project_data/wslda/lib/winterp
-export PATH=$PATH:/home/users/gabrielw/grant_518/project_data/wslda/lib/wdata/bin:/home/users/gabrielw/grant_518/project_data/wslda/tools/bin
+export WSLDA=/mnt/storage_2/project_data/grant_518/wslda
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/mnt/storage_2/project_data/grant_518/wslda/lib/wdata:/mnt/storage_2/project_data/grant_518/wslda/lib/wderiv:/mnt/storage_2/project_data/grant_518/wslda/lib/winterp
+export PATH=$PATH:/mnt/storage_2/project_data/grant_518/wslda/lib/wdata/bin:/mnt/storage_2/project_data/grant_518/wslda/tools/bin
 ```
 
 # Step 3: Compiling ELPA